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ENSP 400: Capstone in Environmental Science and Policy

Research guide for ENSP 400: Capstone in Environmental Science and Policy

Microorganism Research Review

Assignment Objective

To assist USDA’s Animal and Plant Health Inspection Service (APHIS) – Biotechnology Regulatory Services (BRS) scientists in evaluating the plant pest properties of microorganisms under consideration for commercialization as biocontrol organisms, biopesticides, biofertilizers, or bio-stimulants.   

Background

To lessen concerns about environmental problems associated with the use of conventional agrochemicals, there is increasing interest in using microorganisms to protect plants from disease, stimulate growth, and aid plants in the absorption of water and nutrients. In some cases, genetic engineering is used to improve a microorganism’s ability to perform those functions. BRS provides oversight of genetically modified organisms that pose plant pest risks.  A stakeholder who develops a genetically modified microorganism and wants to release it into the environment must seek authorization from BRS. BRS gathers information about microorganisms to assess whether that organism is subject to USDA regulation and if so, what are the appropriate conditions for release.

Problem to be Solved

A genetically modified microorganism may be regulated by BRS if the organism:  is classified taxonomically as a plant pest; contains DNA from a plant pest that can produce a plant pest or cause plant disease; or will be used to control a plant pest (Shams et al., 2024) and poses a plant pest risk. To address these criteria there is a need to gather information on the biological properties of candidate microorganisms to evaluate their plant pest potential.

Questions to Answer

  1. How does the identified microorganism mediate a plant or soil process to promote plant health or control a pest?   
  2. Is the microorganism a known plant pest or could it pose risks that would harm plant health or potentially become a pest?

Search Tips

  • Use your project scope document to create a list of searchable keywords. Add keywords listed in relevant articles to this list.
  • Keep track of your search strings. Many databases will show you your search history, and even let you save searches!
  • If you find relevant references in an article, look them up by title in Google Scholar and read that article for more information. Chain down the literature.
    • This goes for news articles too. If they mention a report or scholarly article, try to find that original document. There may be more information in there that is relevant to your research!
  • Web of Science and Google Scholar will let you see if another article has cited the article you're reading. Chain up the literature.
  • If you are struggling access an article's full text try using the Reload Button.

Databases

Links

Resources from Project Scope:

Articles

Ayilara, M,S., B.S. Adeleke, S.A. Akinola Fayose CA, Adeyemi UT, Gbadegesin LA, Omole RK, Johnson RM, Uthman QO, Babalola OO. 2023. Biopesticides as promising alternatives to synthetic pesticides: A case for microbial pesticides, phytopesticides and nanobiopesticides. Front Microbiol. 14:1040901. https://doi.org/10.3389%2Ffmicb.2023.1040901.

Boro, M., S. Sannyasi, D. Chettri, and A. K. Verma. 2022.  Microorganisms in biological control strategies to manage microbial plant pathogens: a review. Arch Microbiol 204, 666 (2022). https://doi.org/10.1007/s00203-022-03279-w.

Fox. A.R., G.C. Soto, C Valerde and Daniela Russo. 2016. Major cereal crops benefit from biological nitrogen fixation when inoculated with the nitrogen-fixing bacterium Pseudomonas protegens Pf-3 X940. Environmental Microbiology 18:3522-3534. https://doi.org/10.1111/1462-2920.13376.

Jardin, P.D. 2015. Plant biostimulants: Definition, concept, main categories and regulation. Sci. Hortic. 196(30): 3-14. https://doi.org/10.1016/j.scienta.2015.09.021.

Kremer, R.J. 2005. The role of bioherbicides in weed management. Biopestic. Int. 1(3,4): 127-141.

Shams, A., A Fischer, A. Bodnar and M. Kliegman. 2024. Perspectives on genetically engineered microorganisms and their regulation in the United Sates. ACS Synth. Biol.  13:1412–1423. https://doi.org/10.1021/acssynbio.4c00048.

Related Terminology

Biocontrol organisms are natural or modified organisms that antagonize undesirable disease-causing pests and organisms while often promoting the growth of beneficial insects and microorganisms.

Biopesticides are those derived from natural materials. There are three major classes of biopesticides. Biochemical pesticides use natural occurring substances derived from plants, animals, microorganisms, and specific minerals. Microbial pesticides employ the use of microorganisms to produce substances that kill pests. The third class of biopesticides are those where genetic material, usually originating from a microorganism, is incorporated into a plant to induce the plant to produce a substance that kills a pest. Biopesticides within this class are referred to as Plant-Incorporated Protectants (PIPs).

Biofertilizers are substances that contain microorganisms which when added to soil or inert material increase its fertility and promote plant growth.

A plant biostimulant is any substance or microorganism applied to plants with the aim to enhance: uptake of nutrients, abiotic stress tolerance, and/or crop quality traits, regardless of its nutrient content (Jardin, 2015).